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Registro Completo |
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
30/06/2014 |
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Data da última atualização: |
07/04/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
SIQUEIRA, A. F.; ORMEÑO-ORRILLO, E.; SOUZA, R. C.; RODRIGUES, E. P.; ALMEIDA, L. G. P.; BARCELLOS, F. G.; BATISTA, J. S. S.; NAKATANI, A. S.; MARTÍNEZ-ROMERO, E.; VASCONCELOS, A. T. R.; HUNGRIA, M. |
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Afiliação: |
ARTHUR FERNANDES SIQUEIRA, UEL; ERNESTO ORMEÑO-ORRILLO, Universidad Nacional Autónoma de México; RANGEL CELSO SOUZA, Laboratório Nacional de Computação Científica; ELISETE PAINS RODRIGUES, UEL; LUIZ GONZAGA PAULA ALMEIDA, Laboratório Nacional de Computação Científica; FERNANDO GOMES BARCELLOS, UEL; JESIANE STEFÂNIA SILVA BATISTA, UEPG; ANDRE SHIGUEYOSHI NAKATANI; ESPERANZA MARTÍNEZ-ROMERO, Universidad Nacional Autónoma de México; ANA TEREZA RIBEIRO VASCONCELOS, Laboratório Nacional de Computação Científica; MARIANGELA HUNGRIA DA CUNHA, CNPSO. |
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Título: |
Comparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7: elite model strains for understanding symbiotic performance with soybean. |
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Ano de publicação: |
2014 |
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Fonte/Imprenta: |
BMC Genomics, v. 15, n. 420, June 2014. |
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Páginas: |
20 p. |
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ISSN: |
1471-2164 |
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DOI: |
10.1186/1471-2164-15-420 |
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Idioma: |
Inglês |
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Conteúdo: |
The soybean-Bradyrhizobium symbiosis can be highly efficient in fixing nitrogen, but few genomic sequences of elite inoculant strains are available. Here we contribute with information on the genomes of two commercial strains that are broadly applied to soybean crops in the tropics. B. japonicum CPAC 15 (=SEMIA 5079) is outstanding in its saprophytic capacity and competitiveness, whereas B. diazoefficiens CPAC 7 (=SEMIA 5080) is known for its high efficiency in fixing nitrogen. Both are well adapted to tropical soils. The genomes of CPAC 15 and CPAC 7 were compared to each other and also to those of B. japonicum USDA 6T and B. diazoefficiens USDA 110T. Differences in genome size were found between species, with B. japonicum having larger genomes than B. diazoefficiens. Although most of the four genomes were syntenic, genome rearrangements within and between species were observed, including events in the symbiosis island. In addition to the symbiotic region, several genomic islands were identified. Altogether, these features must confer high genomic plasticity that might explain adaptation and differences in symbiotic performance. It was not possible to attribute known functions to half of the predicted genes. About 10% of the genomes was composed of exclusive genes of each strain, but up to 98% of them were of unknown function or coded for mobile genetic elements. In CPAC 15, more genes were associated with secondary metabolites, nutrient transport, iron-acquisition and IAA metabolism, potentially correlated with higher saprophytic capacity and competitiveness than seen with CPAC 7. In CPAC 7, more genes were related to the metabolism of amino acids and hydrogen uptake, potentially correlated with higher efficiency of nitrogen fixation than seen with CPAC 15. Several differences and similarities detected between the two elite soybean-inoculant strains and between the two species of Bradyrhizobium provide new insights into adaptation to tropical soils, efficiency of N2 fixation, nodulation and competitiveness. MenosThe soybean-Bradyrhizobium symbiosis can be highly efficient in fixing nitrogen, but few genomic sequences of elite inoculant strains are available. Here we contribute with information on the genomes of two commercial strains that are broadly applied to soybean crops in the tropics. B. japonicum CPAC 15 (=SEMIA 5079) is outstanding in its saprophytic capacity and competitiveness, whereas B. diazoefficiens CPAC 7 (=SEMIA 5080) is known for its high efficiency in fixing nitrogen. Both are well adapted to tropical soils. The genomes of CPAC 15 and CPAC 7 were compared to each other and also to those of B. japonicum USDA 6T and B. diazoefficiens USDA 110T. Differences in genome size were found between species, with B. japonicum having larger genomes than B. diazoefficiens. Although most of the four genomes were syntenic, genome rearrangements within and between species were observed, including events in the symbiosis island. In addition to the symbiotic region, several genomic islands were identified. Altogether, these features must confer high genomic plasticity that might explain adaptation and differences in symbiotic performance. It was not possible to attribute known functions to half of the predicted genes. About 10% of the genomes was composed of exclusive genes of each strain, but up to 98% of them were of unknown function or coded for mobile genetic elements. In CPAC 15, more genes were associated with secondary metabolites, nutrient transport, iron-acquisition and IAA ... Mostrar Tudo |
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Thesagro: |
Soja. |
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Thesaurus Nal: |
Soybeans. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/104186/1/Comparative-genomics-of-Bradyrhizobium-japonicum-CPAC-15-and-Bradyrhizobium-diazoefficiens-CPAC-7-elite-model-strains-for-understanding-symbiotic-performance-with-soybean.pdf
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Marc: |
LEADER 02978naa a2200301 a 4500
001 1989259
005 2022-04-07
008 2014 bl uuuu u00u1 u #d
022 $a1471-2164
024 7 $a10.1186/1471-2164-15-420$2DOI
100 1 $aSIQUEIRA, A. F.
245 $aComparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7$belite model strains for understanding symbiotic performance with soybean.$h[electronic resource]
260 $c2014
300 $a20 p.
520 $aThe soybean-Bradyrhizobium symbiosis can be highly efficient in fixing nitrogen, but few genomic sequences of elite inoculant strains are available. Here we contribute with information on the genomes of two commercial strains that are broadly applied to soybean crops in the tropics. B. japonicum CPAC 15 (=SEMIA 5079) is outstanding in its saprophytic capacity and competitiveness, whereas B. diazoefficiens CPAC 7 (=SEMIA 5080) is known for its high efficiency in fixing nitrogen. Both are well adapted to tropical soils. The genomes of CPAC 15 and CPAC 7 were compared to each other and also to those of B. japonicum USDA 6T and B. diazoefficiens USDA 110T. Differences in genome size were found between species, with B. japonicum having larger genomes than B. diazoefficiens. Although most of the four genomes were syntenic, genome rearrangements within and between species were observed, including events in the symbiosis island. In addition to the symbiotic region, several genomic islands were identified. Altogether, these features must confer high genomic plasticity that might explain adaptation and differences in symbiotic performance. It was not possible to attribute known functions to half of the predicted genes. About 10% of the genomes was composed of exclusive genes of each strain, but up to 98% of them were of unknown function or coded for mobile genetic elements. In CPAC 15, more genes were associated with secondary metabolites, nutrient transport, iron-acquisition and IAA metabolism, potentially correlated with higher saprophytic capacity and competitiveness than seen with CPAC 7. In CPAC 7, more genes were related to the metabolism of amino acids and hydrogen uptake, potentially correlated with higher efficiency of nitrogen fixation than seen with CPAC 15. Several differences and similarities detected between the two elite soybean-inoculant strains and between the two species of Bradyrhizobium provide new insights into adaptation to tropical soils, efficiency of N2 fixation, nodulation and competitiveness.
650 $aSoybeans
650 $aSoja
700 1 $aORMEÑO-ORRILLO, E.
700 1 $aSOUZA, R. C.
700 1 $aRODRIGUES, E. P.
700 1 $aALMEIDA, L. G. P.
700 1 $aBARCELLOS, F. G.
700 1 $aBATISTA, J. S. S.
700 1 $aNAKATANI, A. S.
700 1 $aMARTÍNEZ-ROMERO, E.
700 1 $aVASCONCELOS, A. T. R.
700 1 $aHUNGRIA, M.
773 $tBMC Genomics$gv. 15, n. 420, June 2014.
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Esconder MarcMostrar Marc Completo |
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Registro original: |
Embrapa Soja (CNPSO) |
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Biblioteca |
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| Registros recuperados : 13 | |
| 1. |  | SIQUEIRA, A. F.; NAKATANI, A. S.; VASCONCELOS, A. T. R. de; ALMEIDA, L. G. P. de; HUNGRIA, M. Anotação Genômica de Bradyrhizobium japonicum estirpes CPAC 15 e CPAC 7: Resultados parciais e sua importância para a cultura de soja. In: REUNIÃO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRIÇÃO DE PLANTAS, 30.; REUNIÃO BRASILEIRA SOBRE MICORRIZAS, 14.; SIMPÓSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 12.; REUNIÃO BRASILEIRA DE BIOLOGIA DO SOLO, 9.; SIMPÓSIO SOBRE SELÊNIO NO BRASIL, 1., 2012, Maceió. A responsabilidade socioambiental da pesquisa agrícola: anais. Viçosa: SBCS, 2012. 3 p. Trab. 1190. 1 CD-ROM. Fertbio.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 2. | | DELAMUTA, J. R. M.; GOMES, D. F.; RIBEIRO, R. A.; CHUEIRE, L. M. O.; SOUZA, R. C.; ALMEIDA, L. G. P.; VASCONCELOS, A. T. R.; HUNGRIA, M. Genome sequence of Bradyrhizobium tropiciagri Strain CNPSo 1112T , isolated from a root nodule of Neonotonia wightii. Genome Announcements, v. 3, n. 6, e01482-15, Nov./Dec. 2015.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 2 |
| Biblioteca(s): Embrapa Soja. |
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| 3. | | HELENE, L. C. F.; GOMES, D. F.; DELAMUTA, J. R. M.; RIBEIRO, R. A.; SOUZA, R. C.; ALMEIDA, L. G. P.; VASCONCELOS, A. T. R.; HUNGRIA, M. Genome sequence of Bradyrhizobium viridifuturi strain SEMIA 690T, a nitrogen-fixing symbiont of Centrosema pubescens. Genome Announcements, v. 3, n. 6, e01481-15, Nov./Dec. 2015.| Tipo: Nota Técnica/Nota Científica |
| Biblioteca(s): Embrapa Soja. |
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| 4. | | CUNHA, C. de O.; ZULETA, L. F. G.; ALMEIDA, L. G. P. de; CIAPINA, L. P.; BORGES, W. L.; PITARD, R. M.; BALDANI, J. I.; STRALIOTTO, R.; FARIA, S. M. de; HUNGRIA, M. Complete genome sequence of Burkholderia phenoliruptriz BR3459a (CLA 1), a heat-tolerant, nitrogen fixing symbiont of Mimosa flocculosa. Journal of bacteriology, v. 194, n. 23, p. 6675-6676, 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agrobiologia. |
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| 5. | | SIQUEIRA, A. F.; ORMEÑO-ORRILLO, E.; SOUZA, R. C.; RODRIGUES, E. P.; ALMEIDA, L. G. P.; BARCELLOS, F. G.; BATISTA, J. S. S.; NAKATANI, A. S.; MARTÍNEZ-ROMERO, E.; VASCONCELOS, A. T. R.; HUNGRIA, M. Comparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7: elite model strains for understanding symbiotic performance with soybean. BMC Genomics, v. 15, n. 420, June 2014. 20 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 6. | | ORMEÑO-ORRILLO, E.; GOMES, D. F.; CERRO, P. del; VASCONCELOS, A. T. R.; CANCHAYA, C.; ALMEIDA, L. G. P.; MERCANTE, F. M.; JAVIER OLLERO, F.; MEGÍAS, M.; HUNGRIA, M. Genome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions. BMC Genomics, v. 17, n. 534, 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agropecuária Oeste; Embrapa Soja. |
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| 7. | | PINTO, F. G. S.; CHUEIRE, L. M. O.; VASCONCELOS, A. T. R.; NICOLÁS, M. F.; ALMEIDA, L. G. P.; SOUZA, R. C.; MENNA, P.; BARCELLOS, F. G.; MEGÍAS, M.; HUNGRIA, M. Novel genes related to nodulation, secretion systems, and surface structures revealed by a genome draft of Rhizobium tropici strain PRF 81. Functional & Integrative Genomics, Heidelberg, v. 9, n. 2, p. 263-270, May 2009.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
|  |
| 8. | | CUNHA, C. de O. C.; ZULETA, L. F. G.; ALMEIDA, L. G. P. de; CIAPINA, L. P.; BORGES, W. L.; PITARD, R. M.; BALDANI, J. I.; STRALIOTTO, R.; FARIA, S. M. de; HUNGRIA, M.; CAVADA, B. S.; MERCANTE, F. M.; VASCONCELOS, A. T. R. de. Complete genome sequence of Burkholderia phenoliruptrix BR3459a (CLA1), a heat-tolerant, nitrogen-fixing symbiont of Mimosa flocculosa. Journal of Bacteriology, Washington, v. 194, n. 23, p. 6675-6676, Dec. 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agrobiologia; Embrapa Soja. |
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| 9. | | CUNHA, C. de O.; ZULETA, L. F. G.; ALMEIDA, L. G. P. de; CIAPINA, L. P.; BORGES, W. L.; PITARD, R. M.; BALDANI, J. I.; STRALIOTTO, R.; FARIA, S. M. de; HUNGRIA, M.; CAVADA, B. S.; MERCANTE, F. M.; VASCONCELOS, A. T. R. de. Complete genome sequence of Burkholderia phenoliruptrix BR3459a (CLA1), a heat-tolerant, nitrogen-fixing symbiont of mimosa flocculosa. Journal of Bacteriology, Washington, v. 194, n. 23, p. 6675-6676, Dec. 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agropecuária Oeste; Embrapa Amapá. |
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| 10. | | ORMEÑO-ORRILLO, E.; MENNA, P.; ALMEIDA, L. G. P.; JAVIER OLLERO, F.; NICOLÁS, M. F.; RODRIGUES, E. P.; NAKATANI, A. S.; BATISTA, J. S. S.; CHUEIRE, L. M. de O.; SOUZA, R. C.; VASCONCELOS, A. T. R.; MEGÍAS, M.; HUNGRIA, M.; MARTÍNEZ-ROMERO, E. Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.). BMC Genomics, v. 13, n. 735, 2012. 26 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 11. | | VASCONCELOS, A. T. R. de; ALMEIDA, D. F. de; HUNGRIA, M.; GUIMARAES, C. T.; ANTONIO, R. V.; ALMEIDA, F. C.; ALMEIDA, L. G. P. de; ALMEIDA, R. de; ALVES-GOMES, J.A.; ANDRADE. E. M.; ARAUJO, J.; ARAUJO, M. F. R. de; ASTOLFI FILHO, S.; AZEVEDO, V, BAPTISTA, A. J.; BATATUS, L. A. M.; BATISTA, J. da S.; BEIO, A.; BERG, C. van den.; BOGO. M.; BONATTO, S.; BORDIGNON, J.; BRIGIDO, M. M.; BRITO, C. A.; BROCCHI, M.; BURITY, H. A.; CAMARGO, A. A.; CARDOSO, D. das D. de P.; CARNEIRO, N. P. The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability. Proceedings of the National Academy of Sciences of the United States of America, Washington, v. 100, n. 20, p. 11660-11665, 2003.| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 12. | | MARINOTTI, O.; CERQUEIRA, G. C.; ALMEIDA, L. G. P. de; FERRO, M. I. T.; LORETO, E. L. da S.; ZAHA, A.; TEIXEIRA, S. M. R.; WESPISER, A. R.; SILVA, A. A.; SCHLINDWEIN, A. D.; PACHECO, A. C. L.; SILVA, A. L. da C.; GRAVELEY, B. R.; WALENZ, B. P.; LIMA, B. de A.; RIBEIRAO, C. A. G.; NUNES-SILVA, C. G.; CARVALHO, C. R. de; SOARES, C. M. de A.; MENEZES, C. B. A. de; MATIOLLI, C.; CAFFREY, D.; ARAÚJO, D. A. M.; OLIVEIRA, D. M. de; GOLENBOCK, D.; GRISARD, E. C.; FANTINATTI-GARBOGGINI, F.; CARVALHO, F. M. de; BARCELLOS, F. G.; PROSDOCIMI, F.; MAY, G.; AZEVEDO JUNIOR, G. M. de; GUIMARÃES, G. M.; OLDMAN, G. H.; PADILHA, I. Q. M.; BATISTA, J. da S.; FERRO, J. A.; RIBEIRO, J. M. C.; FIETTO, J. L. R.; DABBAS, K. M.; CERDEIRA, L.; AGNEZ-LIMA, L. F.; BROCCHI, M.; CARVALHO, M. O. de; TEIXEIRA, M. de M.; MAIA, M. de M. D.; GOLDMAN, M. H. S.; SCHNEIDER, M. P. C.; FELIPE, M. S. S.; HUNGRIA, M.; NICOLÁS, M. F.; PEREIRA, M.; MONTES, A. M.; CANTAO, M. E.; VINCENTZ, M.; RAFAEL, M. S.; SILVERMAN, N.; STOCO, P. H.; SOUZA, R. C.; VICENTINI, R.; GAZZINELLI, R. T. G.; NEVES, R. de O.; SILVA, R.; ASTOLFI-FILHO, S.; MACIEL, T. E. F.; ÜRMÉNYI, T. P.; TADEI, W. P.; CAMARGO, E. P.; VASCONCELOS, A. T. R. de. The Genome of Anopheles darlingi, the main neotropical malaria vector. Nucleic Acid Research, v. 41, n. 15, p. 7387-7400, 2013.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja; Embrapa Suínos e Aves. |
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| 13. | | VASCONCELOS, A. T. R.; FERREIRA, H. B.; BIZARRO, C. V.; BONATTO, S. L.; CARVALHO, M. O.; PINTO, P. M.; ALMEIDA, D. F.; ALMEIDA, L. G. P.; ALMEIDA, R.; ALVES-FILHO, L.; ASSUNÇÃO, E. N.; AZEVEDO, V. A. C.; BOGO, M. R.; BRIGIDO, M. M.; BROCCHI, M.; BURITY, H. A.; CAMARGO, A. A.; CAMARGO, S. S.; CAREPO, M. S.; CARRARO, D. M.; CASCARDO, J. C. de M.; CASTRO, L. A.; CAVALCANTI, G.; CHEMALE, G.; COLLEVATTI, R. G.; CUNHA, C. W.; DALLAGIOVANNA, B.; DAMBRÓS, B. P.; DELLAGOSTIN, O. A.; FALCÃO, C.; FANTINATTI-GARBOGGINI, F.; FELIPE, M. S. S.; FIORENTIN, L.; FRANCO, G. R.; FREITAS, N. S. A.; FRÍAS, D.; GRANGEIRO, T. B.; GRISARD, E. C.; GUIMARÃES, C. T.; HUNGRIA, M.; JARDIM, S. N.; KRIEGER, M. A.; LAURINO, J. P.; LIMA, L. F. A.; LOPES, M. I.; LORETO, E. L. S. MADEIRA, H. M. F.; MANFIO, G. P.; MARANHÃO, A. Q.; MARTINKOVICS, C. T.; MEDEIROS, S. R. B.; MOREIRA, M. A. M.; NEIVA, M.; RAMALHO-NETO, C. E.; NICOLÁS, M. F.; OLIVEIRA, S. C.; PAIXÃO, R. F. C.; PEDROSA, F. O.; PENA, S. D. J.; PEREIRA, M.; PEREIRA-FERRARI, L.; PIFFER, I.; PINTO, L. S; POTRICH, D. P.; SALIM, A. C. M.; SANTOS, F. R.; SCHMITT, R.; SCHNEIDER, M. P. C.; SCHRANK, A.; SCHRANK, I. S.; SCHUCK, A. F.; SEUANEZ, H, N.; SILVA, D. W.; SILVA, R.; SILVA, S. C.; SOARES, C. M. A.; SOUZA, K. R.; SOUZA, R. C.; STAATS, C. C.; STEFFENS, M. B. R.; TEIXEIRA, S. M. R.; URMENYI, T. P.; VAINSTEIN, M. H.; ZUCCHERATO, L. W.; SIMPSON, A. J. G.; ZAHA, A. Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae. Journal of Bacteriology, Washington, v. 187, n. 16, p. 5568-5577, Aug. 2005.| Biblioteca(s): Embrapa Soja. |
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| Registros recuperados : 13 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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